Index

_

__init__() (parallel method)

__worker() (parallel method)

A

abundance_profile_calculation() (in module pyretlife.retrieval_plotting.calculate_secondary_quantities) add_inlay_plot() (in module pyretlife.retrieval_plotting.inlay_plot) add_inlay_plot_labels() (in module pyretlife.retrieval_plotting.inlay_plot) add_secondary_parameter_to_parameters() (in module pyretlife.retrieval_plotting.calculate_secondary_quantities) alpha (MulticolorPatch attribute)

assign_cloud_parameters() (in module pyretlife.retrieval.atmospheric_variables) assign_cube_to_parameters() (RetrievalObject method) assign_knowns() (RetrievalObject method) assign_prior_functions() (RetrievalObject method) assign_priors() (in module pyretlife.retrieval.priors) assign_reflectance_emissivity() (in module pyretlife.retrieval.radiative_transfer)

B

bond_albedo_calculation() (in module pyretlife.retrieval_plotting.calculate_secondary_quantities)

C

calculate() (parallel method), [1] calculate_abundances() (in module pyretlife.retrieval.atmospheric_variables) (RetrievalObject method) calculate_adiabat_profile() (in module pyretlife.retrieval.atmospheric_variables) calculate_emission_flux() (in module pyretlife.retrieval.radiative_transfer) calculate_gravity() (in module pyretlife.retrieval.atmospheric_variables) calculate_guillot_profile() (in module pyretlife.retrieval.atmospheric_variables) calculate_inert() (in module pyretlife.retrieval.atmospheric_variables) calculate_isothermal_profile() (in module pyretlife.retrieval.atmospheric_variables) calculate_line_profile() (in module pyretlife.retrieval.atmospheric_variables) calculate_log_likelihood() (RetrievalObject method) calculate_madhuseager_profile() (in module pyretlife.retrieval.atmospheric_variables) calculate_mmw_MMR() (in module pyretlife.retrieval.atmospheric_variables) calculate_mmw_VMR() (in module pyretlife.retrieval.atmospheric_variables) calculate_mod_madhuseager_profile() (in module pyretlife.retrieval.atmospheric_variables) calculate_moon_flux() (in module pyretlife.retrieval.radiative_transfer) calculate_polynomial_profile() (in module pyretlife.retrieval.atmospheric_variables) calculate_profile_contours() (in module pyretlife.retrieval_plotting.calculate_secondary_quantities)

calculate_profile_contours_new() (in module pyretlife.retrieval_plotting.calculate_secondary_quantities) calculate_pt_profile() (RetrievalObject method) calculate_spectrum() (RetrievalObject method) calculate_spline_profile() (in module pyretlife.retrieval.atmospheric_variables) calculate_vae_profile() (in module pyretlife.retrieval.atmospheric_variables) check_if_configs_match() (in module pyretlife.retrieval.configuration_ingestion) colors (MulticolorPatch attribute) condense_water() (in module pyretlife.retrieval.atmospheric_variables) condense_water_old() (in module pyretlife.retrieval.atmospheric_variables) config (RetrievalObject attribute) convert_knowns_and_parameters() (in module pyretlife.retrieval.units) convert_MMR_to_VMR() (in module pyretlife.retrieval.atmospheric_variables) convert_spectrum() (in module pyretlife.retrieval.units) convert_VMR_to_MMR() (in module pyretlife.retrieval.atmospheric_variables) Corner_Plot() (in module pyretlife.retrieval_plotting.posterior_plotting) create_artists() (Handles method), [1] custom_prior() (in module pyretlife.retrieval.priors) custom_unit() (UnitsUtil static method)

D

define_linelists() (in module pyretlife.retrieval.radiative_transfer)

distance_scale_spectrum() (RetrievalObject method)

F

fourth_power_uniform_prior() (in module pyretlife.retrieval.priors)

G

gaussian_prior() (in module pyretlife.retrieval.priors) generate_color_map_from_levels() (in module pyretlife.retrieval_plotting.color_handling) generate_new_spectrum() (RetrievalObject method) Generate_Parameter_Titles() (in module pyretlife.retrieval_plotting.posterior_plotting) generate_quantile_color_levels() (in module pyretlife.retrieval_plotting.color_handling)

generate_uniform_color_map() (in module pyretlife.retrieval_plotting.color_handling) get_check_opacity_path() (in module pyretlife.retrieval.configuration_ingestion) get_check_prt_path() (in module pyretlife.retrieval.configuration_ingestion) get_mm() (in module pyretlife.retrieval.atmospheric_variables) get_retrieval_path() (in module pyretlife.retrieval.configuration_ingestion)

H

Handles (class in pyretlife.retrieval_plotting.custom_matplotlib_handles)

I

ingest_cia_linelists() (in module pyretlife.retrieval.radiative_transfer) ingest_cloud_linelists() (in module pyretlife.retrieval.radiative_transfer) ingest_opacity_linelists() (in module pyretlife.retrieval.radiative_transfer)

ingest_rayleigh_linelists() (in module pyretlife.retrieval.radiative_transfer) input_opacity_path (RetrievalObject attribute) input_prt_path (RetrievalObject attribute) invalid_prior() (in module pyretlife.retrieval.priors)

J

jobs (parallel attribute)

L

legend_artist() (MulticolorPatchHandler method) load_configuration() (RetrievalObject method)

load_data() (in module pyretlife.retrieval.configuration_ingestion) log_gaussian_prior() (in module pyretlife.retrieval.priors) log_uniform_prior() (in module pyretlife.retrieval.priors)

M

madhuseager_temperature_calculator() (in module pyretlife.retrieval.atmospheric_variables) make_output_folder() (in module pyretlife.retrieval.configuration_ingestion) manager (parallel attribute) module pyretlife.retrieval pyretlife.retrieval.atmospheric_variables pyretlife.retrieval.config_validation pyretlife.retrieval.configuration_conversion_ini_yaml pyretlife.retrieval.configuration_ingestion pyretlife.retrieval.likelihood_validation pyretlife.retrieval.priors pyretlife.retrieval.radiative_transfer pyretlife.retrieval.run pyretlife.retrieval.units pyretlife.retrieval_plotting pyretlife.retrieval_plotting.calculate_secondary_quantities pyretlife.retrieval_plotting.color_handling pyretlife.retrieval_plotting.custom_matplotlib_handles pyretlife.retrieval_plotting.inlay_plot pyretlife.retrieval_plotting.parallel_computation pyretlife.retrieval_plotting.posterior_plotting

MulticolorPatch (class in pyretlife.retrieval_plotting.custom_matplotlib_handles) MulticolorPatchHandler (class in pyretlife.retrieval_plotting.custom_matplotlib_handles)

N

num_proc (parallel attribute)

P

parallel (class in pyretlife.retrieval_plotting.parallel_computation) parallel_pt_profile_calculation() (in module pyretlife.retrieval_plotting.calculate_secondary_quantities) parallel_spectrum_calculation() (in module pyretlife.retrieval_plotting.calculate_secondary_quantities) petitRADTRANS_initialization() (RetrievalObject method) populate_dictionaries() (in module pyretlife.retrieval.configuration_ingestion) Posterior_Plot() (in module pyretlife.retrieval_plotting.posterior_plotting) print_task_assignment() (in module pyretlife.retrieval_plotting.calculate_secondary_quantities) prior_unit_conversion() (UnitsUtil static method) pyretlife.retrieval module pyretlife.retrieval.atmospheric_variables module pyretlife.retrieval.config_validation module pyretlife.retrieval.configuration_conversion_ini_yaml module pyretlife.retrieval.configuration_ingestion module pyretlife.retrieval.likelihood_validation module pyretlife.retrieval.priors module

pyretlife.retrieval.radiative_transfer module pyretlife.retrieval.run module pyretlife.retrieval.units module pyretlife.retrieval_plotting module pyretlife.retrieval_plotting.calculate_secondary_quantities module pyretlife.retrieval_plotting.color_handling module pyretlife.retrieval_plotting.custom_matplotlib_handles module pyretlife.retrieval_plotting.inlay_plot module pyretlife.retrieval_plotting.parallel_computation module pyretlife.retrieval_plotting.posterior_plotting module

R

read_config_file() (in module pyretlife.retrieval.configuration_ingestion) read_data() (in module pyretlife.retrieval.configuration_conversion_ini_yaml) read_var() (in module pyretlife.retrieval.configuration_conversion_ini_yaml)

rebin_spectrum() (in module pyretlife.retrieval.radiative_transfer) result (parallel attribute) RetrievalObject (class in pyretlife.retrieval.run) return_units() (UnitsUtil static method)

S

save_configuration() (in module pyretlife.retrieval.configuration_ingestion) save_environment_variables() (in module pyretlife.retrieval.configuration_ingestion) save_github_commit_string() (in module pyretlife.retrieval.configuration_ingestion) save_input_spectra() (in module pyretlife.retrieval.configuration_ingestion) save_retrieved_parameters() (in module pyretlife.retrieval.configuration_ingestion)

saving_inputs_to_folder() (RetrievalObject method) scale_flux_to_distance() (in module pyretlife.retrieval.radiative_transfer) Scale_Posteriors() (in module pyretlife.retrieval_plotting.posterior_plotting) second_power_uniform_prior() (in module pyretlife.retrieval.priors) set_log_ground_pressure() (in module pyretlife.retrieval.atmospheric_variables) set_prt_opacity() (in module pyretlife.retrieval.configuration_ingestion)

T

task_assignment() (in module pyretlife.retrieval_plotting.calculate_secondary_quantities) third_power_uniform_prior() (in module pyretlife.retrieval.priors)

truth_unit_conversion() (UnitsUtil static method) twod_uniform_prior() (in module pyretlife.retrieval.priors)

U

uniform_prior() (in module pyretlife.retrieval.priors) unit_conversion() (RetrievalObject method) unit_spectrum_conversion() (UnitsUtil static method)

unit_spectrum_cube() (UnitsUtil static method) UnitsUtil (class in pyretlife.retrieval.units) unity_cube_to_prior_space() (RetrievalObject method) upper_log_uniform_prior() (in module pyretlife.retrieval.priors)

V

vae_initialization() (RetrievalObject method) validate_abundances() (in module pyretlife.retrieval.likelihood_validation) validate_clouds() (in module pyretlife.retrieval.likelihood_validation) validate_config() (in module pyretlife.retrieval.config_validation) validate_cube_finite() (in module pyretlife.retrieval.likelihood_validation)

validate_positive_mass() (in module pyretlife.retrieval.likelihood_validation) validate_positive_temperatures() (in module pyretlife.retrieval.likelihood_validation) validate_pt_profile() (in module pyretlife.retrieval.likelihood_validation) validate_spectrum_goodness() (in module pyretlife.retrieval.likelihood_validation) validate_sum_of_abundances() (in module pyretlife.retrieval.likelihood_validation) VMR_to_MMR() (in module pyretlife.retrieval_plotting.calculate_secondary_quantities)

W

water_ice_vapor_pressure() (in module pyretlife.retrieval.atmospheric_variables)

X

xi() (in module pyretlife.retrieval.atmospheric_variables)